PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043432m
Common NameCISIN_1g043432mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 105aa    MW: 12745.8 Da    PI: 8.9738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043432mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-141197183
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83
                       f+k+l++sdv++ gr+vlpkk ae++    +++ ++ + led   +++W++k+++  ++ +gr+++ ++++ F k   L+ gD ++ +
  orange1.1g043432m 11 FEKQLKNSDVNAAGRIVLPKKLAETYlpPVNEKAGFWMHLEDmDFNKVWTFKFRFwpNN-RGRMYIFENTRAFIKRYCLELGDYIMVY 97
                       99*************************9666668899*****5556*******995333.44455566***************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-228100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-179105No hitNo description
SuperFamilySSF1019361.44E-19999IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.00911105IPR003340B3 DNA binding domain
SMARTSM010192.4E-711104IPR003340B3 DNA binding domain
PfamPF023625.9E-111197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
EINPFLMRFL FEKQLKNSDV NAAGRIVLPK KLAETYLPPV NEKAGFWMHL EDMDFNKVWT  60
FKFRFWPNNR GRMYIFENTR AFIKRYCLEL GDYIMVYKDE LEGSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438851.12e-73hypothetical protein CICLE_v10033303mg, partial
RefseqXP_015387151.13e-73PREDICTED: uncharacterized protein LOC107177608
SwissprotQ9LW311e-34FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A067H6546e-74A0A067H654_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4TQE12e-73V4TQE1_9R
STRINGGSMUA_Achr3P32440_0014e-35(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2275334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-36B3 family protein